Appendix F — Environment and R Packages

Published

October 23, 2025

F.1 Environment

This book was built using

  • R version 4.5.1 (2025-06-13).
  • RStudio version 2025.09.1 Build 401
  • Quarto version: 1.7.30
  • OS: Darwin, 24.6.0, Darwin Kernel Version 24.6.0: Mon Aug 11 21:16:52 PDT 2025; root:xnu-11417.140.69.701.11~1/RELEASE_ARM64_T8112, AU-macbook.local, arm64, root, rressler, rressler

F.2 R Packages

This book uses the following non-Base R packages as of 2025-10-23.

               Package    Version Built
1                abind      1.4-8 4.5.0
2                aRxiv       0.12 4.5.0
3          AsioHeaders   1.30.2-1 4.5.0
4              askpass      1.2.1 4.5.0
5           assertthat      0.2.1 4.5.0
6              attempt      0.3.1 4.5.0
7            available      1.1.0 4.5.0
8            backports      1.5.0 4.5.0
9            base64enc      0.1-3 4.5.0
10                  BH   1.87.0-1 4.5.0
11              binman      0.1.3 4.5.0
12                 bit      4.6.0 4.5.0
13               bit64    4.6.0-1 4.5.0
14              bitops      1.0-9 4.5.0
15                blob      1.2.4 4.5.0
16                brew     1.0-10 4.5.0
17                brio      1.1.5 4.5.0
18               broom      1.0.9 4.5.0
19               bslib      0.9.0 4.5.0
20              cachem      1.1.0 4.5.0
21               callr      3.7.6 4.5.0
22             caTools     1.18.3 4.5.0
23          cellranger      1.1.0 4.5.0
24            chromote      0.5.1 4.5.0
25            classInt     0.4-11 4.5.0
26                 cli      3.6.5 4.5.0
27               clipr      0.8.0 4.5.0
28          clisymbols      1.2.0 4.5.0
29          colorspace      2.1-1 4.5.0
30            cols4all        0.9 4.5.0
31          commonmark      2.0.0 4.5.0
32              config      0.3.2 4.5.0
33          conflicted      1.2.0 4.5.0
34               cpp11      0.5.2 4.5.0
35              crayon      1.5.3 4.5.0
36         credentials      2.0.2 4.5.0
37           crosstalk      1.2.1 4.5.0
38                curl      7.0.0 4.5.0
39          data.table     1.17.8 4.5.0
40                 DBI      1.2.3 4.5.0
41              dbplyr      2.5.1 4.5.0
42                desc      1.4.3 4.5.0
43            devtools      2.4.5 4.5.0
44             diffobj      0.3.6 4.5.0
45              digest     0.6.37 4.5.0
46             downlit      0.4.4 4.5.0
47               dplyr      1.1.4 4.5.0
48                  DT       0.33 4.5.0
49              dtplyr      1.3.1 4.5.0
50              duckdb      1.4.0 4.5.0
51               e1071     1.7-16 4.5.0
52            ellipsis      0.3.2 4.5.0
53            errorist      0.1.2 4.5.0
54            evaluate      1.0.4 4.5.0
55               fansi      1.0.6 4.5.0
56              farver      2.1.2 4.5.0
57             fastmap      1.2.0 4.5.0
58           fastmatch      1.1-6 4.5.0
59            filelock      1.0.3 4.5.0
60         fontawesome      0.5.3 4.5.0
61             forcats      1.0.0 4.5.0
62               fresh      0.2.1 4.5.0
63                  fs      1.6.6 4.5.0
64              future     1.67.0 4.5.0
65        future.apply     1.20.0 4.5.0
66           gapminder      1.0.1 4.5.0
67              gargle      1.5.2 4.5.0
68            generics      0.1.4 4.5.0
69           geojsonsf      2.0.3 4.5.0
70          geometries      0.2.4 4.5.0
71                geos      0.2.4 4.5.0
72                gert      2.1.5 4.5.0
73           gganimate     1.0.10 4.5.0
74             ggforce      0.5.0 4.5.0
75             ggplot2      3.5.2 4.5.0
76              ggraph      2.2.1 4.5.0
77             ggrepel      0.9.6 4.5.0
78           ggspatial      1.1.9 4.5.0
79            ggthemes      5.1.0 4.5.0
80                  gh      1.5.0 4.5.0
81              gifski   1.32.0-2 4.5.0
82            gitcreds      0.1.2 4.5.0
83             globals     0.18.0 4.5.0
84                glue      1.8.0 4.5.0
85               golem      0.5.1 4.5.0
86         googledrive      2.1.1 4.5.0
87       googlesheets4      1.1.1 4.5.0
88        graphlayouts      1.2.2 4.5.0
89           gridExtra        2.3 4.5.0
90              gtable      0.3.6 4.5.0
91          gutenbergr      0.3.0 4.5.0
92               haven      2.5.5 4.5.0
93                here      1.0.1 4.5.0
94              hexbin     1.28.5 4.5.0
95               highr       0.11 4.5.0
96                 hms      1.1.3 4.5.0
97           htmltools    0.5.8.1 4.5.0
98         htmlwidgets      1.6.4 4.5.0
99              httpuv     1.6.16 4.5.0
100               httr      1.4.7 4.5.0
101              httr2      1.2.1 4.5.0
102                ids      1.0.1 4.5.0
103             igraph      2.1.4 4.5.0
104                ini      0.3.1 4.5.0
105            isoband      0.2.7 4.5.0
106           ISOcodes 2025.05.18 4.5.0
107        janeaustenr      1.0.0 4.5.0
108            janitor      2.2.1 4.5.0
109               jose      1.2.1 4.5.0
110               jpeg     0.1-11 4.5.0
111          jquerylib      0.1.4 4.5.0
112            jsonify      1.2.2 4.5.0
113           jsonlite      2.0.0 4.5.0
114            keyring      1.4.1 4.5.0
115              knitr       1.50 4.5.0
116           labeling      0.4.3 4.5.0
117              later      1.4.2 4.5.0
118           lazyeval      0.2.2 4.5.0
119             leafem      0.2.4 4.5.0
120             leafgl      0.2.2 4.5.0
121         leaflegend      1.2.1 4.5.0
122            leaflet      2.2.2 4.5.0
123  leaflet.providers      2.0.0 4.5.0
124            leafpop      0.1.0 4.5.0
125           leafsync      0.1.0 4.5.0
126            libgeos   3.11.1-3 4.5.0
127          lifecycle      1.0.4 4.5.0
128              lintr      3.2.0 4.5.0
129            listenv      0.9.1 4.5.0
130             logger      0.4.1 4.5.0
131            lpSolve     5.6.23 4.5.0
132          lubridate      1.9.4 4.5.0
133             lwgeom     0.2-14 4.5.0
134             magick      2.8.7 4.5.0
135           magrittr      2.0.3 4.5.0
136               maps      3.4.3 4.5.0
137           maptiles     0.10.0 4.5.0
138            mapview     2.11.2 4.5.0
139            memoise      2.0.1 4.5.0
140               mime       0.13 4.5.0
141             miniUI      0.1.2 4.5.0
142             modelr     0.1.11 4.5.0
143         modeltools     0.2-24 4.5.0
144     NasdaqDataLink      1.0.0 4.5.0
145            netstat      0.1.2 4.5.0
146                NLP      0.3-2 4.5.0
147       nycflights13      1.0.2 4.5.0
148               odbc      1.6.3 4.5.0
149            openssl      2.3.4 4.5.0
150            packrat      0.9.3 4.5.0
151     palmerpenguins      0.1.1 4.5.0
152         parallelly     1.45.1 4.5.0
153          patchwork      1.3.1 4.5.0
154                PDE     1.4.10 4.5.0
155             pillar     1.11.0 4.5.0
156           pkgbuild      1.4.8 4.5.0
157          pkgconfig      2.0.3 4.5.0
158            pkgdown      2.1.3 4.5.0
159            pkgload      1.4.0 4.5.0
160                PKI     0.1-15 4.5.0
161             plotly     4.11.0 4.5.0
162               plyr      1.8.9 4.5.0
163                png      0.1-8 4.5.0
164             polite      0.1.3 4.5.0
165           polyclip     1.10-7 4.5.0
166             praise      1.0.0 4.5.0
167        prettyunits      1.2.0 4.5.0
168           processx      3.8.6 4.5.0
169            profvis      0.4.0 4.5.0
170           progress      1.2.3 4.5.0
171          progressr     0.16.0 4.5.0
172           promises      1.3.3 4.5.0
173              proxy     0.4-27 4.5.0
174                 ps      1.9.1 4.5.0
175              purrr      1.1.0 4.5.0
176             Quandl     2.11.0 4.5.0
177           quanteda      4.3.1 4.5.0
178             quarto      1.5.0 4.5.0
179            R.cache     0.17.0 4.5.0
180        R.methodsS3      1.8.2 4.5.0
181               R.oo     1.27.1 4.5.0
182            R.utils     2.13.0 4.5.0
183                 R6      2.6.1 4.5.0
184               ragg      1.4.0 4.5.0
185         rapidjsonr      1.2.0 4.5.0
186           rappdirs      0.3.3 4.5.0
187             raster     3.6-32 4.5.0
188         ratelimitr      0.4.1 4.5.0
189          rcmdcheck      1.4.0 4.5.0
190       RColorBrewer      1.1-3 4.5.0
191               Rcpp      1.1.0 4.5.0
192      RcppArmadillo   14.6.0-1 4.5.0
193           RcppTOML      0.2.3 4.5.0
194        readMDTable      0.3.2 4.5.0
195              readr      2.1.5 4.5.0
196             readxl      1.4.5 4.5.0
197            rematch      2.0.0 4.5.0
198           rematch2      2.1.2 4.5.0
199            remotes      2.5.0 4.5.0
200               renv      1.1.5 4.5.0
201               repr      1.1.7 4.5.0
202             reprex      2.1.1 4.5.0
203        repurrrsive      1.1.0 4.5.0
204         reticulate     1.43.0 4.5.0
205                rex      1.2.1 4.5.0
206               rhub      2.0.1 4.5.0
207              rJava     1.0-11 4.5.0
208              rlang      1.1.6 4.5.0
209         rmapshaper      0.5.0 4.5.0
210          rmarkdown       2.29 4.5.0
211      rnaturalearth      1.1.0 4.5.0
212  rnaturalearthdata      1.0.0 4.5.0
213 rnaturalearthhires 1.0.0.9000 4.5.1
214          robotstxt     0.7.15 4.5.0
215               rosm      0.3.0 4.5.0
216           roxygen2      7.3.2 4.5.0
217        rpivotTable      0.3.0 4.5.0
218        rplaywright     1.43.6 4.5.1
219          rprojroot      2.1.0 4.5.0
220          rsconnect      1.5.1 4.5.0
221          RSelenium      1.7.9 4.5.0
222         rstudioapi     0.17.1 4.5.0
223          rversions      2.1.2 4.5.0
224              rvest      1.0.4 4.5.0
225                 s2      1.1.9 4.5.0
226               sass     0.4.10 4.5.0
227          satellite      1.0.5 4.5.0
228             scales      1.4.0 4.5.0
229           searcher      0.0.7 4.5.0
230            selectr      0.4-2 4.5.0
231             semver      0.2.0 4.5.0
232              servr       0.32 4.5.0
233        sessioninfo      1.2.3 4.5.0
234                 sf     1.0-21 4.5.0
235          sfheaders      0.4.4 4.5.0
236              shiny     1.11.1 4.5.0
237        shinythemes      1.2.0 4.5.0
238              skimr      2.2.1 4.5.0
239               slam     0.1-55 4.5.0
240         slippymath      0.3.1 4.5.0
241          snakecase     0.11.1 4.5.0
242          SnowballC      0.7.1 4.5.0
243      snowflakeauth      0.2.0 4.5.1
244        sourcetools    0.1.7-1 4.5.0
245                 sp      2.2-0 4.5.0
246          spacesXYZ      1.6-0 4.5.0
247          spiderbar      0.2.5 4.5.0
248           spotifyr      2.2.5 4.5.0
249              stars      0.6-8 4.5.0
250         starwarsdb      0.1.3 4.5.0
251          stopwords        2.3 4.5.0
252         stringdist     0.9.15 4.5.0
253            stringi      1.8.7 4.5.0
254            stringr      1.5.1 4.5.0
255             styler     1.10.3 4.5.0
256            svglite      2.2.1 4.5.0
257                sys      3.4.3 4.5.0
258        systemfonts      1.2.3 4.5.0
259          tabulapdf    1.0.5-5 4.5.0
260             tcltk2      1.6.1 4.5.0
261              terra     1.8-60 4.5.0
262           testthat      3.2.3 4.5.0
263           textdata      0.4.5 4.5.0
264        textshaping      1.0.1 4.5.0
265           thematic      0.1.7 4.5.0
266             tibble      3.3.0 4.5.0
267         tidycensus      1.7.3 4.5.0
268          tidygraph      1.3.1 4.5.0
269              tidyr      1.3.1 4.5.0
270         tidyselect      1.2.1 4.5.0
271           tidytext      0.4.3 4.5.0
272          tidyverse      2.0.0 4.5.0
273             tigris      2.2.1 4.5.0
274         timechange      0.3.0 4.5.0
275            tinytex       0.57 4.5.0
276                 tm     0.7-16 4.5.0
277               tmap        4.2 4.5.0
278          tmaptools        3.3 4.5.0
279         tokenizers      0.3.0 4.5.0
280        topicmodels     0.2-17 4.5.0
281         transformr      0.1.5 4.5.0
282          triebeard      0.4.1 4.5.0
283             tweenr      2.0.3 4.5.0
284               tzdb      0.5.0 4.5.0
285              units      0.8-7 4.5.0
286         urlchecker      1.0.1 4.5.0
287           urltools    1.7.3.1 4.5.0
288            usethis      3.1.0 4.5.0
289              usmap      0.8.0 4.5.0
290          usmapdata      0.6.0 4.5.0
291               utf8      1.2.6 4.5.0
292               uuid      1.2-1 4.5.0
293                 V8      8.0.0 4.5.0
294              vctrs      0.6.5 4.5.0
295            viridis      0.6.5 4.5.0
296        viridisLite      0.4.2 4.5.0
297              vroom      1.6.5 4.5.0
298              waldo      0.6.2 4.5.0
299              wdman      0.2.6 4.5.0
300          websocket      1.4.4 4.5.0
301            whisker      0.4.1 4.5.0
302             whoami      1.3.0 4.5.0
303              withr      3.0.2 4.5.0
304                 wk      0.9.4 4.5.0
305          wordcloud        2.6 4.5.0
306               xfun       0.52 4.5.0
307                XML  3.99-0.18 4.5.0
308               xml2      1.3.8 4.5.0
309       xmlparsedata      1.0.5 4.5.0
310              xopen      1.0.1 4.5.0
311             xtable      1.8-4 4.5.0
312                xts     0.14.1 4.5.0
313               yaml     2.3.10 4.5.0
314              yesno      0.1.3 4.5.0
315                zip      2.3.3 4.5.0
316                zoo     1.8-14 4.5.0

F.3 Python Environment

python:         /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/3bf_jNEFyEBbiY2F9Pd_J/bin/python3
libpython:      /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/python/cpython-3.11.13-macos-aarch64-none/lib/libpython3.11.dylib
pythonhome:     /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/3bf_jNEFyEBbiY2F9Pd_J:/Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/3bf_jNEFyEBbiY2F9Pd_J
virtualenv:     /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/3bf_jNEFyEBbiY2F9Pd_J/bin/activate_this.py
version:        3.11.13 (main, Jul 11 2025, 22:26:10) [Clang 20.1.4 ]
numpy:          /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/3bf_jNEFyEBbiY2F9Pd_J/lib/python3.11/site-packages/numpy
numpy_version:  2.3.4

NOTE: Python version was forced by py_require()