Appendix F — Environment and R Packages

Published

August 24, 2025

F.1 Environment

This book was built using

  • R version R version 4.5.1 (2025-06-13).
  • RStudio version ‘2025.05.1 Build 513’
  • Quarto: 1.7.30
  • OS: Darwin, 24.6.0, Darwin Kernel Version 24.6.0: Mon Jul 14 11:30:51 PDT 2025; root:xnu-11417.140.69~1/RELEASE_ARM64_T8112, AU-macbook.local, arm64, root, rressler, rressler

F.2 R Packages

This book uses the following non-Base R packages as of 2025-08-24.

               Package    Version Built
1                abind      1.4-8 4.5.0
2                aRxiv       0.12 4.5.0
3          AsioHeaders   1.30.2-1 4.5.0
4              askpass      1.2.1 4.5.0
5           assertthat      0.2.1 4.5.0
6              attempt      0.3.1 4.5.0
7            backports      1.5.0 4.5.0
8            base64enc      0.1-3 4.5.0
9                   BH   1.87.0-1 4.5.0
10              binman      0.1.3 4.5.0
11                 bit      4.6.0 4.5.0
12               bit64    4.6.0-1 4.5.0
13              bitops      1.0-9 4.5.0
14                blob      1.2.4 4.5.0
15                brew     1.0-10 4.5.0
16                brio      1.1.5 4.5.0
17               broom      1.0.9 4.5.0
18               bslib      0.9.0 4.5.0
19              cachem      1.1.0 4.5.0
20               callr      3.7.6 4.5.0
21             caTools     1.18.3 4.5.0
22          cellranger      1.1.0 4.5.0
23            chromote      0.5.1 4.5.0
24            classInt     0.4-11 4.5.0
25                 cli      3.6.5 4.5.0
26               clipr      0.8.0 4.5.0
27          colorspace      2.1-1 4.5.0
28            cols4all        0.8 4.5.0
29          commonmark      2.0.0 4.5.0
30              config      0.3.2 4.5.0
31          conflicted      1.2.0 4.5.0
32               cpp11      0.5.2 4.5.0
33              crayon      1.5.3 4.5.0
34         credentials      2.0.2 4.5.0
35           crosstalk      1.2.1 4.5.0
36                curl      6.4.0 4.5.0
37          data.table     1.17.8 4.5.0
38                 DBI      1.2.3 4.5.0
39              dbplyr      2.5.0 4.5.0
40                desc      1.4.3 4.5.0
41            devtools      2.4.5 4.5.0
42             diffobj      0.3.6 4.5.0
43              digest     0.6.37 4.5.0
44             downlit      0.4.4 4.5.0
45               dplyr      1.1.4 4.5.0
46              dtplyr      1.3.1 4.5.0
47              duckdb      1.3.2 4.5.0
48               e1071     1.7-16 4.5.0
49            ellipsis      0.3.2 4.5.0
50            errorist      0.1.2 4.5.0
51            evaluate      1.0.4 4.5.0
52               fansi      1.0.6 4.5.0
53              farver      2.1.2 4.5.0
54             fastmap      1.2.0 4.5.0
55           fastmatch      1.1-6 4.5.0
56            filelock      1.0.3 4.5.0
57         fontawesome      0.5.3 4.5.0
58             forcats      1.0.0 4.5.0
59               fresh      0.2.1 4.5.0
60                  fs      1.6.6 4.5.0
61           gapminder      1.0.1 4.5.0
62              gargle      1.5.2 4.5.0
63            generics      0.1.4 4.5.0
64           geojsonsf      2.0.3 4.5.0
65          geometries      0.2.4 4.5.0
66                geos      0.2.4 4.5.0
67                gert      2.1.5 4.5.0
68           gganimate     1.0.10 4.5.0
69             ggforce      0.5.0 4.5.0
70             ggplot2      3.5.2 4.5.0
71              ggraph      2.2.1 4.5.0
72             ggrepel      0.9.6 4.5.0
73           ggspatial      1.1.9 4.5.0
74            ggthemes      5.1.0 4.5.0
75                  gh      1.5.0 4.5.0
76              gifski   1.32.0-2 4.5.0
77            gitcreds      0.1.2 4.5.0
78                glue      1.8.0 4.5.0
79               golem      0.5.1 4.5.0
80         googledrive      2.1.1 4.5.0
81       googlesheets4      1.1.1 4.5.0
82        graphlayouts      1.2.2 4.5.0
83           gridExtra        2.3 4.5.0
84              gtable      0.3.6 4.5.0
85          gutenbergr      0.3.0 4.5.0
86               haven      2.5.5 4.5.0
87                here      1.0.1 4.5.0
88              hexbin     1.28.5 4.5.0
89               highr       0.11 4.5.0
90                 hms      1.1.3 4.5.0
91           htmltools    0.5.8.1 4.5.0
92         htmlwidgets      1.6.4 4.5.0
93              httpuv     1.6.16 4.5.0
94                httr      1.4.7 4.5.0
95               httr2      1.2.1 4.5.0
96                 ids      1.0.1 4.5.0
97              igraph      2.1.4 4.5.0
98                 ini      0.3.1 4.5.0
99             isoband      0.2.7 4.5.0
100           ISOcodes 2025.05.18 4.5.0
101        janeaustenr      1.0.0 4.5.0
102            janitor      2.2.1 4.5.0
103               jpeg     0.1-11 4.5.0
104          jquerylib      0.1.4 4.5.0
105            jsonify      1.2.2 4.5.0
106           jsonlite      2.0.0 4.5.0
107            keyring      1.4.1 4.5.0
108              knitr       1.50 4.5.0
109           labeling      0.4.3 4.5.0
110              later      1.4.2 4.5.0
111           lazyeval      0.2.2 4.5.0
112             leafem      0.2.4 4.5.0
113             leafgl      0.2.2 4.5.0
114         leaflegend      1.2.1 4.5.0
115            leaflet      2.2.2 4.5.0
116  leaflet.providers      2.0.0 4.5.0
117            leafpop      0.1.0 4.5.0
118           leafsync      0.1.0 4.5.0
119            libgeos   3.11.1-3 4.5.0
120          lifecycle      1.0.4 4.5.0
121              lintr      3.2.0 4.5.0
122             logger      0.4.0 4.5.0
123            lpSolve     5.6.23 4.5.0
124          lubridate      1.9.4 4.5.0
125             lwgeom     0.2-14 4.5.0
126           magrittr      2.0.3 4.5.0
127               maps      3.4.3 4.5.0
128           maptiles     0.10.0 4.5.0
129            mapview     2.11.2 4.5.0
130            memoise      2.0.1 4.5.0
131               mime       0.13 4.5.0
132             miniUI      0.1.2 4.5.0
133             modelr     0.1.11 4.5.0
134         modeltools     0.2-24 4.5.0
135                NLP      0.3-2 4.5.0
136       nycflights13      1.0.2 4.5.0
137            openssl      2.3.3 4.5.0
138     palmerpenguins      0.1.1 4.5.0
139          patchwork      1.3.1 4.5.0
140             pillar     1.11.0 4.5.0
141           pkgbuild      1.4.8 4.5.0
142          pkgconfig      2.0.3 4.5.0
143            pkgdown      2.1.3 4.5.0
144            pkgload      1.4.0 4.5.0
145             plotly     4.11.0 4.5.0
146               plyr      1.8.9 4.5.0
147                png      0.1-8 4.5.0
148           polyclip     1.10-7 4.5.0
149             praise      1.0.0 4.5.0
150        prettyunits      1.2.0 4.5.0
151           processx      3.8.6 4.5.0
152            profvis      0.4.0 4.5.0
153           progress      1.2.3 4.5.0
154           promises      1.3.3 4.5.0
155              proxy     0.4-27 4.5.0
156                 ps      1.9.1 4.5.0
157              purrr      1.1.0 4.5.0
158             Quandl     2.11.0 4.5.0
159           quanteda      4.3.1 4.5.0
160             quarto      1.5.0 4.5.0
161            R.cache     0.17.0 4.5.0
162        R.methodsS3      1.8.2 4.5.0
163               R.oo     1.27.1 4.5.0
164            R.utils     2.13.0 4.5.0
165                 R6      2.6.1 4.5.0
166               ragg      1.4.0 4.5.0
167         rapidjsonr      1.2.0 4.5.0
168           rappdirs      0.3.3 4.5.0
169             raster     3.6-32 4.5.0
170          rcmdcheck      1.4.0 4.5.0
171       RColorBrewer      1.1-3 4.5.0
172               Rcpp      1.1.0 4.5.0
173      RcppArmadillo   14.6.0-1 4.5.0
174           RcppTOML      0.2.3 4.5.0
175        readMDTable      0.3.2 4.5.0
176              readr      2.1.5 4.5.0
177             readxl      1.4.5 4.5.0
178            rematch      2.0.0 4.5.0
179           rematch2      2.1.2 4.5.0
180            remotes      2.5.0 4.5.0
181               renv      1.1.5 4.5.0
182               repr      1.1.7 4.5.0
183             reprex      2.1.1 4.5.0
184        repurrrsive      1.1.0 4.5.0
185         reticulate     1.43.0 4.5.0
186                rex      1.2.1 4.5.0
187               rhub      2.0.1 4.5.0
188              rJava     1.0-11 4.5.0
189              rlang      1.1.6 4.5.0
190          rmarkdown       2.29 4.5.0
191      rnaturalearth      1.1.0 4.5.0
192  rnaturalearthdata      1.0.0 4.5.0
193 rnaturalearthhires 1.0.0.9000 4.5.1
194               rosm      0.3.0 4.5.0
195           roxygen2      7.3.2 4.5.0
196        rpivotTable      0.3.0 4.5.0
197          rprojroot      2.1.0 4.5.0
198          RSelenium      1.7.9 4.5.0
199         rstudioapi     0.17.1 4.5.0
200          rversions      2.1.2 4.5.0
201              rvest      1.0.4 4.5.0
202                 s2      1.1.9 4.5.0
203               sass     0.4.10 4.5.0
204          satellite      1.0.5 4.5.0
205             scales      1.4.0 4.5.0
206           searcher      0.0.7 4.5.0
207            selectr      0.4-2 4.5.0
208             semver      0.2.0 4.5.0
209              servr       0.32 4.5.0
210        sessioninfo      1.2.3 4.5.0
211                 sf     1.0-21 4.5.0
212          sfheaders      0.4.4 4.5.0
213              shiny     1.11.1 4.5.0
214        shinythemes      1.2.0 4.5.0
215              skimr      2.2.1 4.5.0
216               slam     0.1-55 4.5.0
217         slippymath      0.3.1 4.5.0
218          snakecase     0.11.1 4.5.0
219          SnowballC      0.7.1 4.5.0
220        sourcetools    0.1.7-1 4.5.0
221                 sp      2.2-0 4.5.0
222          spacesXYZ      1.6-0 4.5.0
223           spotifyr      2.2.5 4.5.0
224              stars      0.6-8 4.5.0
225          stopwords        2.3 4.5.0
226         stringdist     0.9.15 4.5.0
227            stringi      1.8.7 4.5.0
228            stringr      1.5.1 4.5.0
229             styler     1.10.3 4.5.0
230            svglite      2.2.1 4.5.0
231                sys      3.4.3 4.5.0
232        systemfonts      1.2.3 4.5.0
233          tabulapdf    1.0.5-5 4.5.0
234              terra     1.8-60 4.5.0
235           testthat      3.2.3 4.5.0
236           textdata      0.4.5 4.5.0
237        textshaping      1.0.1 4.5.0
238           thematic      0.1.7 4.5.0
239             tibble      3.3.0 4.5.0
240         tidycensus      1.7.3 4.5.0
241          tidygraph      1.3.1 4.5.0
242              tidyr      1.3.1 4.5.0
243         tidyselect      1.2.1 4.5.0
244           tidytext      0.4.3 4.5.0
245          tidyverse      2.0.0 4.5.0
246             tigris      2.2.1 4.5.0
247         timechange      0.3.0 4.5.0
248            tinytex       0.57 4.5.0
249                 tm     0.7-16 4.5.0
250               tmap        4.1 4.5.0
251          tmaptools        3.3 4.5.0
252         tokenizers      0.3.0 4.5.0
253        topicmodels     0.2-17 4.5.0
254         transformr      0.1.5 4.5.0
255          triebeard      0.4.1 4.5.0
256             tweenr      2.0.3 4.5.0
257               tzdb      0.5.0 4.5.0
258              units      0.8-7 4.5.0
259         urlchecker      1.0.1 4.5.0
260           urltools    1.7.3.1 4.5.0
261            usethis      3.1.0 4.5.0
262              usmap      0.8.0 4.5.0
263          usmapdata      0.6.0 4.5.0
264               utf8      1.2.6 4.5.0
265               uuid      1.2-1 4.5.0
266              vctrs      0.6.5 4.5.0
267            viridis      0.6.5 4.5.0
268        viridisLite      0.4.2 4.5.0
269              vroom      1.6.5 4.5.0
270              waldo      0.6.2 4.5.0
271              wdman      0.2.6 4.5.0
272          websocket      1.4.4 4.5.0
273            whisker      0.4.1 4.5.0
274             whoami      1.3.0 4.5.0
275              withr      3.0.2 4.5.0
276                 wk      0.9.4 4.5.0
277          wordcloud        2.6 4.5.0
278               xfun       0.52 4.5.0
279                XML  3.99-0.18 4.5.0
280               xml2      1.3.8 4.5.0
281       xmlparsedata      1.0.5 4.5.0
282              xopen      1.0.1 4.5.0
283             xtable      1.8-4 4.5.0
284                xts     0.14.1 4.5.0
285               yaml     2.3.10 4.5.0
286                zip      2.3.3 4.5.0
287                zoo     1.8-14 4.5.0

F.3 Python Environment

python:         /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA/bin/python3
libpython:      /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/python/cpython-3.11.13-macos-aarch64-none/lib/libpython3.11.dylib
pythonhome:     /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA:/Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA
virtualenv:     /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA/bin/activate_this.py
version:        3.11.13 (main, Jul 11 2025, 22:26:10) [Clang 20.1.4 ]
numpy:          /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA/lib/python3.11/site-packages/numpy
numpy_version:  2.3.2

NOTE: Python version was forced by py_require()