Appendix D — Environment and R Packages

Published

August 30, 2024

D.1 Environment

This book was built using

  • R version R version 4.4.1 (2024-06-14).
  • RStudio version ‘2024.04.2 Build 764’
  • Quarto: 1.5.55
  • OS: Darwin, 23.6.0, Darwin Kernel Version 23.6.0: Mon Jul 29 21:16:46 PDT 2024; root:xnu-10063.141.2~1/RELEASE_ARM64_T8112, AU-macbook.local, arm64, root, rressler, rressler

D.2 R Packages

This book uses the following non-Base R packages as of 2024-08-26.

                         Package    Version Built
1                          abind      1.4-5 4.4.0
2                          aRxiv       0.10 4.4.0
3                    AsioHeaders   1.22.1-2 4.4.0
4                        askpass      1.2.0 4.4.0
5                     assertthat      0.2.1 4.4.0
6                        attempt      0.3.1 4.4.0
7                      attention      0.4.0 4.4.0
8                      available      1.1.0 4.4.0
9                      backports      1.5.0 4.4.0
10                     base64enc      0.1-3 4.4.0
11                            BH   1.84.0-0 4.4.0
12                          bigD      0.2.0 4.4.0
13                        binman      0.1.3 4.4.0
14                           bit      4.0.5 4.4.0
15                         bit64      4.0.5 4.4.0
16                        bitops      1.0-8 4.4.0
17                          blob      1.2.4 4.4.0
18                          brew     1.0-10 4.4.0
19                          brio      1.1.5 4.4.0
20                         broom      1.0.6 4.4.0
21                         bslib      0.8.0 4.4.0
22                        cachem      1.1.0 4.4.0
23                         callr      3.7.6 4.4.0
24                       caTools     1.18.2 4.4.0
25                    cellranger      1.1.0 4.4.0
26                      chromote      0.2.0 4.4.0
27                      classInt     0.4-10 4.4.0
28                           cli      3.6.3 4.4.0
29                         clipr      0.8.0 4.4.0
30                    clisymbols      1.2.0 4.4.0
31                   collections      0.3.7 4.4.0
32                    colorspace      2.1-1 4.4.0
33                    commonmark      1.9.1 4.4.0
34                        config      0.3.2 4.4.0
35                    conflicted      1.2.0 4.4.0
36                         cpp11      0.4.7 4.4.0
37                        crayon      1.5.3 4.4.0
38                   credentials      2.0.1 4.4.0
39                     crosstalk      1.2.1 4.4.0
40                          crul      1.5.0 4.4.0
41                          curl      5.2.2 4.4.1
42                     cyclocomp      1.1.1 4.4.0
43                    data.table     1.15.4 4.4.0
44                           DBI      1.2.3 4.4.0
45                        dbplyr      2.5.0 4.4.0
46                          desc      1.4.3 4.4.0
47                      devtools      2.4.5 4.4.0
48                     dichromat    2.0-0.1 4.4.0
49                       diffobj      0.3.5 4.4.0
50                        digest     0.6.37 4.4.1
51                       downlit      0.4.4 4.4.0
52                         dplyr      1.1.4 4.4.0
53                            DT       0.33 4.4.0
54                        dtplyr      1.3.1 4.4.0
55                        duckdb    1.0.0-2 4.4.0
56                      duckplyr      0.4.1 4.4.0
57                         e1071     1.7-14 4.4.0
58                      ellipsis      0.3.2 4.4.0
59                      errorist      0.1.2 4.4.0
60                      evaluate     0.24.0 4.4.0
61                         fansi      1.0.6 4.4.0
62                        farver      2.1.2 4.4.0
63                       fastmap      1.2.0 4.4.0
64                     fastmatch      1.1-4 4.4.0
65                      filelock      1.0.3 4.4.0
66                   fontawesome      0.5.2 4.4.0
67                       forcats      1.0.0 4.4.0
68                         fresh      0.2.1 4.4.0
69                            fs      1.6.4 4.4.0
70                     gapminder      1.0.0 4.4.0
71                        gargle      1.5.2 4.4.0
72                      generics      0.1.3 4.4.0
73                     geojsonsf      2.0.3 4.4.0
74                    geometries      0.2.4 4.4.0
75                      geonames      0.999 4.4.0
76                          geos      0.2.4 4.4.0
77                          gert      2.1.1 4.4.0
78                     gganimate      1.0.9 4.4.0
79                       ggforce      0.4.2 4.4.0
80                       ggplot2      3.5.1 4.4.0
81                        ggraph      2.2.1 4.4.0
82                       ggrepel      0.9.5 4.4.0
83                     ggspatial      1.1.9 4.4.0
84                      ggthemes      5.1.0 4.4.0
85                            gh      1.4.1 4.4.0
86                        gifski   1.12.0-2 4.4.0
87                      gitcreds      0.1.2 4.4.0
88                          glue      1.7.0 4.4.0
89                         golem      0.5.0 4.4.1
90                   googledrive      2.1.1 4.4.0
91                 googlesheets4      1.1.1 4.4.0
92                  graphlayouts      1.1.1 4.4.0
93                     gridExtra        2.3 4.4.0
94                            gt     0.11.0 4.4.0
95                        gtable      0.3.5 4.4.0
96                    gutenbergr      0.2.4 4.4.0
97                         haven      2.5.4 4.4.0
98                          here      1.0.1 4.4.0
99                        hexbin     1.28.3 4.4.0
100                        highr       0.11 4.4.0
101                          hms      1.1.3 4.4.0
102                       hoardr      0.5.4 4.4.0
103                    htmltools    0.5.8.1 4.4.0
104                  htmlwidgets      1.6.4 4.4.0
105                     httpcode      0.3.0 4.4.0
106                       httpuv     1.6.15 4.4.0
107                         httr      1.4.7 4.4.0
108                        httr2      1.0.3 4.4.1
109                          ids      1.0.1 4.4.0
110                       igraph      2.0.3 4.4.0
111                          ini      0.3.1 4.4.0
112                        ISLR2      1.3-2 4.4.0
113                      isoband      0.2.7 4.4.0
114                     ISOcodes 2024.02.12 4.4.0
115                  janeaustenr      1.0.0 4.4.0
116                      janitor      2.2.0 4.4.0
117                         jpeg     0.1-10 4.4.0
118                    jquerylib      0.1.4 4.4.0
119                      jsonify      1.2.2 4.4.0
120                     jsonlite      1.8.8 4.4.0
121                   juicyjuice      0.1.0 4.4.0
122                      keyring      1.3.2 4.4.0
123                        knitr       1.48 4.4.0
124                     labeling      0.4.3 4.4.0
125                       Lahman     11.0-0 4.4.0
126                        later      1.3.2 4.4.0
127                     lazyeval      0.2.2 4.4.0
128                       leafem      0.2.3 4.4.0
129                      leaflet      2.2.2 4.4.0
130            leaflet.providers      2.0.0 4.4.0
131                      leafpop      0.1.0 4.4.0
132                     leafsync      0.1.0 4.4.0
133                      libgeos   3.11.1-2 4.4.0
134                    lifecycle      1.0.4 4.4.0
135                        lintr      3.1.2 4.4.0
136                      lpSolve     5.6.20 4.4.0
137                    lubridate      1.9.3 4.4.0
138                       lwgeom     0.2-14 4.4.0
139                     magrittr      2.0.3 4.4.0
140                         maps      3.4.2 4.4.0
141                      mapview     2.11.2 4.4.0
142                     markdown       1.13 4.4.0
143                      memoise      2.0.1 4.4.0
144                         mime       0.12 4.4.0
145                       miniUI    0.1.1.1 4.4.0
146                       modelr     0.1.11 4.4.0
147                   modeltools     0.2-23 4.4.0
148                      munsell      0.5.1 4.4.0
149                      netstat      0.1.2 4.4.0
150                          NLP      0.3-0 4.4.0
151                 nycflights13      1.0.2 4.4.0
152                      openssl      2.2.1 4.4.0
153                      packrat      0.9.2 4.4.0
154               palmerpenguins      0.1.1 4.4.0
155                    parsedate      1.3.1 4.4.0
156                    patchwork      1.2.0 4.4.0
157                         paws      0.6.0 4.4.0
158               paws.analytics      0.6.0 4.4.0
159 paws.application.integration      0.6.0 4.4.0
160                  paws.common      0.7.5 4.4.1
161                 paws.compute      0.6.1 4.4.0
162         paws.cost.management      0.6.1 4.4.0
163     paws.customer.engagement      0.6.0 4.4.0
164                paws.database      0.6.0 4.4.0
165         paws.developer.tools      0.6.0 4.4.0
166      paws.end.user.computing      0.6.0 4.4.0
167        paws.machine.learning      0.6.0 4.4.0
168              paws.management      0.6.1 4.4.0
169              paws.networking      0.6.0 4.4.0
170       paws.security.identity      0.6.1 4.4.0
171                 paws.storage      0.6.0 4.4.0
172                          PDE     1.4.10 4.4.0
173                       pillar      1.9.0 4.4.0
174                     pkgbuild      1.4.4 4.4.0
175                    pkgconfig      2.0.3 4.4.0
176                      pkgdown      2.1.0 4.4.0
177                      pkgload      1.4.0 4.4.0
178                          PKI     0.1-14 4.4.0
179                       plotly     4.10.4 4.4.0
180                         plyr      1.8.9 4.4.0
181                          png      0.1-8 4.4.0
182                     polyclip     1.10-7 4.4.0
183                       praise      1.0.0 4.4.0
184                  prettyunits      1.2.0 4.4.0
185                     processx      3.8.4 4.4.0
186                      profvis      0.3.8 4.4.0
187                     progress      1.2.3 4.4.0
188                     promises      1.3.0 4.4.0
189                        proxy     0.4-27 4.4.0
190                           ps      1.7.7 4.4.0
191                        purrr      1.0.2 4.4.0
192                       Quandl     2.11.0 4.4.0
193                     quanteda      4.0.2 4.4.0
194                       quarto      1.4.4 4.4.0
195                      R.cache     0.16.0 4.4.0
196                  R.methodsS3      1.8.2 4.4.0
197                         R.oo     1.26.0 4.4.0
198                      R.utils     2.12.3 4.4.0
199                           R6      2.5.1 4.4.0
200                         ragg      1.3.2 4.4.0
201                   rapidjsonr      1.2.0 4.4.0
202                     rappdirs      0.3.3 4.4.0
203                       raster     3.6-26 4.4.0
204                    rcmdcheck      1.4.0 4.4.0
205                 RColorBrewer      1.1-3 4.4.0
206                         Rcpp     1.0.13 4.4.0
207                RcppArmadillo   14.0.0-1 4.4.0
208                    RcppEigen  0.3.4.0.2 4.4.1
209                 RcppParallel      5.1.9 4.4.1
210                     RcppTOML      0.2.2 4.4.0
211                    reactable      0.4.4 4.4.0
212                       reactR      0.6.0 4.4.0
213                        readr      2.1.5 4.4.0
214                       readxl      1.4.3 4.4.0
215                      rematch      2.0.0 4.4.0
216                     rematch2      2.1.2 4.4.0
217                      remotes      2.5.0 4.4.0
218                         renv      1.0.7 4.4.0
219                         repr      1.1.7 4.4.0
220                       reprex      2.1.1 4.4.0
221                  repurrrsive      1.1.0 4.4.0
222                   reticulate     1.38.0 4.4.0
223                          rex      1.2.1 4.4.0
224                         rhub      2.0.0 4.4.0
225                        rJava     1.0-11 4.4.0
226                        rjson     0.2.22 4.4.1
227                        rlang      1.1.4 4.4.0
228                    rmarkdown       2.28 4.4.0
229                rnaturalearth      1.0.1 4.4.0
230            rnaturalearthdata      1.0.0 4.4.0
231           rnaturalearthhires 1.0.0.9000 4.4.0
232                         rosm      0.3.0 4.4.0
233                     roxygen2      7.3.2 4.4.0
234                  rpivotTable      0.3.0 4.4.0
235                    rprojroot      2.0.4 4.4.0
236                    rsconnect      1.3.1 4.4.0
237                    RSelenium      1.7.9 4.4.0
238                   rstudioapi     0.16.0 4.4.0
239                       rtweet      2.0.0 4.4.0
240                    rversions      2.1.2 4.4.0
241                        rvest      1.0.4 4.4.0
242                           s2      1.1.7 4.4.0
243                         sass      0.4.9 4.4.0
244                    satellite      1.0.5 4.4.0
245                       scales      1.3.0 4.4.0
246                     searcher      0.0.7 4.4.0
247                      selectr      0.4-2 4.4.0
248                       semver      0.2.0 4.4.0
249                        servr       0.30 4.4.0
250                  sessioninfo      1.2.2 4.4.0
251                           sf     1.0-16 4.4.0
252                    sfheaders      0.4.4 4.4.0
253                        shiny      1.9.1 4.4.0
254                  shinythemes      1.2.0 4.4.0
255                        skimr      2.1.5 4.4.0
256                         slam     0.1-52 4.4.0
257                    snakecase     0.11.1 4.4.0
258                    SnowballC      0.7.1 4.4.0
259                       sodium      1.3.1 4.4.0
260                  sourcetools    0.1.7-1 4.4.0
261                           sp      2.1-4 4.4.0
262                     spotifyr      2.2.4 4.4.0
263                        stars      0.6-6 4.4.0
264                   starwarsdb      0.1.2 4.4.0
265                    stopwords        2.3 4.4.0
266                   stringdist     0.9.12 4.4.0
267                      stringi      1.8.4 4.4.0
268                      stringr      1.5.1 4.4.0
269                       styler     1.10.3 4.4.0
270                      svglite      2.1.3 4.4.0
271                          sys      3.4.2 4.4.0
272                  systemfonts      1.1.0 4.4.0
273                    tabulapdf    1.0.5-3 4.4.0
274                tabulizerjars      1.0.1 4.4.0
275                       tcltk2     1.2-11 4.4.0
276                        terra     1.7-78 4.4.0
277                     testthat    3.2.1.1 4.4.0
278                     textdata      0.4.5 4.4.0
279                  textshaping      0.4.0 4.4.0
280                     thematic      0.1.6 4.4.0
281                       tibble      3.2.1 4.4.0
282                   tidycensus      1.6.5 4.4.0
283                    tidygraph      1.3.1 4.4.0
284                        tidyr      1.3.1 4.4.0
285                   tidyselect      1.2.1 4.4.0
286                     tidytext      0.4.2 4.4.0
287                    tidyverse      2.0.0 4.4.0
288                       tigris        2.1 4.4.0
289                   timechange      0.3.0 4.4.0
290                      tinytex       0.52 4.4.0
291                           tm     0.7-14 4.4.1
292                         tmap      3.3-4 4.4.0
293                    tmaptools      3.1-1 4.4.0
294                   tokenizers      0.3.0 4.4.0
295                  topicmodels     0.2-17 4.4.0
296                  transformer      0.2.0 4.4.0
297                   transformr      0.1.5 4.4.0
298                    triebeard      0.4.1 4.4.0
299                       tweenr      2.0.3 4.4.0
300                         tzdb      0.4.0 4.4.0
301                        units      0.8-5 4.4.0
302                   urlchecker      1.0.1 4.4.0
303                     urltools      1.7.3 4.4.0
304                      usethis      3.0.0 4.4.0
305                        usmap      0.7.1 4.4.0
306                    usmapdata      0.3.0 4.4.0
307                         utf8      1.2.4 4.4.0
308                         uuid      1.2-1 4.4.0
309                           V8      5.0.0 4.4.0
310                        vctrs      0.6.5 4.4.0
311                      viridis      0.6.5 4.4.0
312                  viridisLite      0.4.2 4.4.0
313                        vroom      1.6.5 4.4.0
314                        waldo      0.5.3 4.4.1
315                        wdman      0.2.6 4.4.0
316                    websocket      1.4.2 4.4.0
317                      whisker      0.4.1 4.4.0
318                       whoami      1.3.0 4.4.0
319                  widgetframe      0.3.1 4.4.0
320                        withr      3.0.1 4.4.0
321                           wk      0.9.2 4.4.0
322                    wordcloud        2.6 4.4.0
323                         xfun       0.47 4.4.0
324                          XML  3.99-0.17 4.4.0
325                         xml2      1.3.6 4.4.0
326                 xmlparsedata      1.0.5 4.4.0
327                        xopen      1.0.1 4.4.0
328                       xtable      1.8-4 4.4.0
329                          xts     0.14.0 4.4.0
330                         yaml     2.3.10 4.4.0
331                        yesno      0.1.3 4.4.0
332                          zip      2.3.1 4.4.0
333                          zoo     1.8-12 4.4.0

D.3 Python Environment

python:         /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/bin/python
libpython:      /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/lib/libpython3.10.dylib
pythonhome:     /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate:/Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate
version:        3.10.14 | packaged by conda-forge | (main, Mar 20 2024, 12:51:49) [Clang 16.0.6 ]
numpy:          /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/lib/python3.10/site-packages/numpy
numpy_version:  1.26.4

NOTE: Python version was forced by RETICULATE_PYTHON