Appendix F — Environment and R Packages

Published

September 6, 2025

F.1 Environment

This book was built using

  • R version R version 4.5.1 (2025-06-13).
  • RStudio version ‘2025.05.1 Build 513’
  • Quarto: 1.7.30
  • OS: Darwin, 24.6.0, Darwin Kernel Version 24.6.0: Mon Jul 14 11:30:51 PDT 2025; root:xnu-11417.140.69~1/RELEASE_ARM64_T8112, AU-macbook.local, arm64, root, rressler, rressler

F.2 R Packages

This book uses the following non-Base R packages as of 2025-09-06.

               Package    Version Built
1                abind      1.4-8 4.5.0
2                aRxiv       0.12 4.5.0
3          AsioHeaders   1.30.2-1 4.5.0
4              askpass      1.2.1 4.5.0
5           assertthat      0.2.1 4.5.0
6              attempt      0.3.1 4.5.0
7            available      1.1.0 4.5.0
8            backports      1.5.0 4.5.0
9            base64enc      0.1-3 4.5.0
10                  BH   1.87.0-1 4.5.0
11              binman      0.1.3 4.5.0
12                 bit      4.6.0 4.5.0
13               bit64    4.6.0-1 4.5.0
14              bitops      1.0-9 4.5.0
15                blob      1.2.4 4.5.0
16                brew     1.0-10 4.5.0
17                brio      1.1.5 4.5.0
18               broom      1.0.9 4.5.0
19               bslib      0.9.0 4.5.0
20              cachem      1.1.0 4.5.0
21               callr      3.7.6 4.5.0
22             caTools     1.18.3 4.5.0
23          cellranger      1.1.0 4.5.0
24            chromote      0.5.1 4.5.0
25            classInt     0.4-11 4.5.0
26                 cli      3.6.5 4.5.0
27               clipr      0.8.0 4.5.0
28          clisymbols      1.2.0 4.5.0
29          colorspace      2.1-1 4.5.0
30            cols4all        0.8 4.5.0
31          commonmark      2.0.0 4.5.0
32              config      0.3.2 4.5.0
33          conflicted      1.2.0 4.5.0
34               cpp11      0.5.2 4.5.0
35              crayon      1.5.3 4.5.0
36         credentials      2.0.2 4.5.0
37           crosstalk      1.2.1 4.5.0
38                curl      6.4.0 4.5.0
39          data.table     1.17.8 4.5.0
40                 DBI      1.2.3 4.5.0
41              dbplyr      2.5.0 4.5.0
42                desc      1.4.3 4.5.0
43            devtools      2.4.5 4.5.0
44             diffobj      0.3.6 4.5.0
45              digest     0.6.37 4.5.0
46             downlit      0.4.4 4.5.0
47               dplyr      1.1.4 4.5.0
48                  DT       0.33 4.5.0
49              dtplyr      1.3.1 4.5.0
50              duckdb      1.3.2 4.5.0
51               e1071     1.7-16 4.5.0
52            ellipsis      0.3.2 4.5.0
53            errorist      0.1.2 4.5.0
54            evaluate      1.0.4 4.5.0
55               fansi      1.0.6 4.5.0
56              farver      2.1.2 4.5.0
57             fastmap      1.2.0 4.5.0
58           fastmatch      1.1-6 4.5.0
59            filelock      1.0.3 4.5.0
60         fontawesome      0.5.3 4.5.0
61             forcats      1.0.0 4.5.0
62               fresh      0.2.1 4.5.0
63                  fs      1.6.6 4.5.0
64              future     1.67.0 4.5.0
65        future.apply     1.20.0 4.5.0
66           gapminder      1.0.1 4.5.0
67              gargle      1.5.2 4.5.0
68            generics      0.1.4 4.5.0
69           geojsonsf      2.0.3 4.5.0
70          geometries      0.2.4 4.5.0
71                geos      0.2.4 4.5.0
72                gert      2.1.5 4.5.0
73           gganimate     1.0.10 4.5.0
74             ggforce      0.5.0 4.5.0
75             ggplot2      3.5.2 4.5.0
76              ggraph      2.2.1 4.5.0
77             ggrepel      0.9.6 4.5.0
78           ggspatial      1.1.9 4.5.0
79            ggthemes      5.1.0 4.5.0
80                  gh      1.5.0 4.5.0
81              gifski   1.32.0-2 4.5.0
82            gitcreds      0.1.2 4.5.0
83             globals     0.18.0 4.5.0
84                glue      1.8.0 4.5.0
85               golem      0.5.1 4.5.0
86         googledrive      2.1.1 4.5.0
87       googlesheets4      1.1.1 4.5.0
88        graphlayouts      1.2.2 4.5.0
89           gridExtra        2.3 4.5.0
90              gtable      0.3.6 4.5.0
91          gutenbergr      0.3.0 4.5.0
92               haven      2.5.5 4.5.0
93                here      1.0.1 4.5.0
94              hexbin     1.28.5 4.5.0
95               highr       0.11 4.5.0
96                 hms      1.1.3 4.5.0
97           htmltools    0.5.8.1 4.5.0
98         htmlwidgets      1.6.4 4.5.0
99              httpuv     1.6.16 4.5.0
100               httr      1.4.7 4.5.0
101              httr2      1.2.1 4.5.0
102                ids      1.0.1 4.5.0
103             igraph      2.1.4 4.5.0
104                ini      0.3.1 4.5.0
105            isoband      0.2.7 4.5.0
106           ISOcodes 2025.05.18 4.5.0
107        janeaustenr      1.0.0 4.5.0
108            janitor      2.2.1 4.5.0
109               jose      1.2.1 4.5.0
110               jpeg     0.1-11 4.5.0
111          jquerylib      0.1.4 4.5.0
112            jsonify      1.2.2 4.5.0
113           jsonlite      2.0.0 4.5.0
114            keyring      1.4.1 4.5.0
115              knitr       1.50 4.5.0
116           labeling      0.4.3 4.5.0
117              later      1.4.2 4.5.0
118           lazyeval      0.2.2 4.5.0
119             leafem      0.2.4 4.5.0
120             leafgl      0.2.2 4.5.0
121         leaflegend      1.2.1 4.5.0
122            leaflet      2.2.2 4.5.0
123  leaflet.providers      2.0.0 4.5.0
124            leafpop      0.1.0 4.5.0
125           leafsync      0.1.0 4.5.0
126            libgeos   3.11.1-3 4.5.0
127          lifecycle      1.0.4 4.5.0
128              lintr      3.2.0 4.5.0
129            listenv      0.9.1 4.5.0
130             logger      0.4.0 4.5.0
131            lpSolve     5.6.23 4.5.0
132          lubridate      1.9.4 4.5.0
133             lwgeom     0.2-14 4.5.0
134             magick      2.8.7 4.5.0
135           magrittr      2.0.3 4.5.0
136               maps      3.4.3 4.5.0
137           maptiles     0.10.0 4.5.0
138            mapview     2.11.2 4.5.0
139            memoise      2.0.1 4.5.0
140               mime       0.13 4.5.0
141             miniUI      0.1.2 4.5.0
142             modelr     0.1.11 4.5.0
143         modeltools     0.2-24 4.5.0
144     NasdaqDataLink      1.0.0 4.5.0
145            netstat      0.1.2 4.5.0
146                NLP      0.3-2 4.5.0
147       nycflights13      1.0.2 4.5.0
148            openssl      2.3.3 4.5.0
149            packrat      0.9.3 4.5.0
150     palmerpenguins      0.1.1 4.5.0
151         parallelly     1.45.1 4.5.0
152          patchwork      1.3.1 4.5.0
153                PDE     1.4.10 4.5.0
154             pillar     1.11.0 4.5.0
155           pkgbuild      1.4.8 4.5.0
156          pkgconfig      2.0.3 4.5.0
157            pkgdown      2.1.3 4.5.0
158            pkgload      1.4.0 4.5.0
159                PKI     0.1-15 4.5.0
160             plotly     4.11.0 4.5.0
161               plyr      1.8.9 4.5.0
162                png      0.1-8 4.5.0
163             polite      0.1.3 4.5.0
164           polyclip     1.10-7 4.5.0
165             praise      1.0.0 4.5.0
166        prettyunits      1.2.0 4.5.0
167           processx      3.8.6 4.5.0
168            profvis      0.4.0 4.5.0
169           progress      1.2.3 4.5.0
170           promises      1.3.3 4.5.0
171              proxy     0.4-27 4.5.0
172                 ps      1.9.1 4.5.0
173              purrr      1.1.0 4.5.0
174             Quandl     2.11.0 4.5.0
175           quanteda      4.3.1 4.5.0
176             quarto      1.5.0 4.5.0
177            R.cache     0.17.0 4.5.0
178        R.methodsS3      1.8.2 4.5.0
179               R.oo     1.27.1 4.5.0
180            R.utils     2.13.0 4.5.0
181                 R6      2.6.1 4.5.0
182               ragg      1.4.0 4.5.0
183         rapidjsonr      1.2.0 4.5.0
184           rappdirs      0.3.3 4.5.0
185             raster     3.6-32 4.5.0
186         ratelimitr      0.4.1 4.5.0
187          rcmdcheck      1.4.0 4.5.0
188       RColorBrewer      1.1-3 4.5.0
189               Rcpp      1.1.0 4.5.0
190      RcppArmadillo   14.6.0-1 4.5.0
191           RcppTOML      0.2.3 4.5.0
192        readMDTable      0.3.2 4.5.0
193              readr      2.1.5 4.5.0
194             readxl      1.4.5 4.5.0
195            rematch      2.0.0 4.5.0
196           rematch2      2.1.2 4.5.0
197            remotes      2.5.0 4.5.0
198               renv      1.1.5 4.5.0
199               repr      1.1.7 4.5.0
200             reprex      2.1.1 4.5.0
201        repurrrsive      1.1.0 4.5.0
202         reticulate     1.43.0 4.5.0
203                rex      1.2.1 4.5.0
204               rhub      2.0.1 4.5.0
205              rJava     1.0-11 4.5.0
206              rlang      1.1.6 4.5.0
207          rmarkdown       2.29 4.5.0
208      rnaturalearth      1.1.0 4.5.0
209  rnaturalearthdata      1.0.0 4.5.0
210 rnaturalearthhires 1.0.0.9000 4.5.1
211          robotstxt     0.7.15 4.5.0
212               rosm      0.3.0 4.5.0
213           roxygen2      7.3.2 4.5.0
214        rpivotTable      0.3.0 4.5.0
215          rprojroot      2.1.0 4.5.0
216          rsconnect      1.5.1 4.5.0
217          RSelenium      1.7.9 4.5.0
218         rstudioapi     0.17.1 4.5.0
219          rversions      2.1.2 4.5.0
220              rvest      1.0.4 4.5.0
221                 s2      1.1.9 4.5.0
222               sass     0.4.10 4.5.0
223          satellite      1.0.5 4.5.0
224             scales      1.4.0 4.5.0
225           searcher      0.0.7 4.5.0
226            selectr      0.4-2 4.5.0
227             semver      0.2.0 4.5.0
228              servr       0.32 4.5.0
229        sessioninfo      1.2.3 4.5.0
230                 sf     1.0-21 4.5.0
231          sfheaders      0.4.4 4.5.0
232              shiny     1.11.1 4.5.0
233        shinythemes      1.2.0 4.5.0
234              skimr      2.2.1 4.5.0
235               slam     0.1-55 4.5.0
236         slippymath      0.3.1 4.5.0
237          snakecase     0.11.1 4.5.0
238          SnowballC      0.7.1 4.5.0
239      snowflakeauth      0.2.0 4.5.1
240        sourcetools    0.1.7-1 4.5.0
241                 sp      2.2-0 4.5.0
242          spacesXYZ      1.6-0 4.5.0
243          spiderbar      0.2.5 4.5.0
244           spotifyr      2.2.5 4.5.0
245              stars      0.6-8 4.5.0
246         starwarsdb      0.1.3 4.5.0
247          stopwords        2.3 4.5.0
248         stringdist     0.9.15 4.5.0
249            stringi      1.8.7 4.5.0
250            stringr      1.5.1 4.5.0
251             styler     1.10.3 4.5.0
252            svglite      2.2.1 4.5.0
253                sys      3.4.3 4.5.0
254        systemfonts      1.2.3 4.5.0
255          tabulapdf    1.0.5-5 4.5.0
256             tcltk2      1.6.1 4.5.0
257              terra     1.8-60 4.5.0
258           testthat      3.2.3 4.5.0
259           textdata      0.4.5 4.5.0
260        textshaping      1.0.1 4.5.0
261           thematic      0.1.7 4.5.0
262             tibble      3.3.0 4.5.0
263         tidycensus      1.7.3 4.5.0
264          tidygraph      1.3.1 4.5.0
265              tidyr      1.3.1 4.5.0
266         tidyselect      1.2.1 4.5.0
267           tidytext      0.4.3 4.5.0
268          tidyverse      2.0.0 4.5.0
269             tigris      2.2.1 4.5.0
270         timechange      0.3.0 4.5.0
271            tinytex       0.57 4.5.0
272                 tm     0.7-16 4.5.0
273               tmap        4.1 4.5.0
274          tmaptools        3.3 4.5.0
275         tokenizers      0.3.0 4.5.0
276        topicmodels     0.2-17 4.5.0
277         transformr      0.1.5 4.5.0
278          triebeard      0.4.1 4.5.0
279             tweenr      2.0.3 4.5.0
280               tzdb      0.5.0 4.5.0
281              units      0.8-7 4.5.0
282         urlchecker      1.0.1 4.5.0
283           urltools    1.7.3.1 4.5.0
284            usethis      3.1.0 4.5.0
285              usmap      0.8.0 4.5.0
286          usmapdata      0.6.0 4.5.0
287               utf8      1.2.6 4.5.0
288               uuid      1.2-1 4.5.0
289              vctrs      0.6.5 4.5.0
290            viridis      0.6.5 4.5.0
291        viridisLite      0.4.2 4.5.0
292              vroom      1.6.5 4.5.0
293              waldo      0.6.2 4.5.0
294              wdman      0.2.6 4.5.0
295          websocket      1.4.4 4.5.0
296            whisker      0.4.1 4.5.0
297             whoami      1.3.0 4.5.0
298              withr      3.0.2 4.5.0
299                 wk      0.9.4 4.5.0
300          wordcloud        2.6 4.5.0
301               xfun       0.52 4.5.0
302                XML  3.99-0.18 4.5.0
303               xml2      1.3.8 4.5.0
304       xmlparsedata      1.0.5 4.5.0
305              xopen      1.0.1 4.5.0
306             xtable      1.8-4 4.5.0
307                xts     0.14.1 4.5.0
308               yaml     2.3.10 4.5.0
309              yesno      0.1.3 4.5.0
310                zip      2.3.3 4.5.0
311                zoo     1.8-14 4.5.0

F.3 Python Environment

python:         /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA/bin/python3
libpython:      /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/python/cpython-3.11.13-macos-aarch64-none/lib/libpython3.11.dylib
pythonhome:     /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA:/Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA
virtualenv:     /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA/bin/activate_this.py
version:        3.11.13 (main, Jul 11 2025, 22:26:10) [Clang 20.1.4 ]
numpy:          /Users/rressler/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/dzcgb_nGsfHwKUTVCEcZA/lib/python3.11/site-packages/numpy
numpy_version:  2.3.2

NOTE: Python version was forced by py_require()