Appendix D — Environment and R Packages

Published

June 11, 2025

D.1 Environment

This book was built using

  • R version R version 4.5.0 (2025-04-11).
  • RStudio version ‘2024.09.1 Build 394’
  • Quarto: 1.7.30
  • OS: Darwin, 24.5.0, Darwin Kernel Version 24.5.0: Tue Apr 22 19:54:26 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T8112, AU-macbook.local, arm64, root, rressler, rressler

D.2 R Packages

This book uses the following non-Base R packages as of 2025-06-11.

               Package    Version Built
1                abind      1.4-8 4.5.0
2                aRxiv       0.10 4.5.0
3          AsioHeaders   1.30.2-1 4.5.0
4              askpass      1.2.1 4.5.0
5           assertthat      0.2.1 4.5.0
6              attempt      0.3.1 4.5.0
7            backports      1.5.0 4.5.0
8            base64enc      0.1-3 4.5.0
9                   BH   1.87.0-1 4.5.0
10              binman      0.1.3 4.5.0
11                 bit      4.6.0 4.5.0
12               bit64    4.6.0-1 4.5.0
13              bitops      1.0-9 4.5.0
14                blob      1.2.4 4.5.0
15                brew     1.0-10 4.5.0
16                brio      1.1.5 4.5.0
17               broom      1.0.8 4.5.0
18               bslib      0.9.0 4.5.0
19              cachem      1.1.0 4.5.0
20               callr      3.7.6 4.5.0
21             caTools     1.18.3 4.5.0
22          cellranger      1.1.0 4.5.0
23            chromote      0.5.1 4.5.0
24            classInt     0.4-11 4.5.0
25                 cli      3.6.5 4.5.0
26               clipr      0.8.0 4.5.0
27          colorspace      2.1-1 4.5.0
28            cols4all        0.8 4.5.0
29          commonmark      1.9.5 4.5.0
30              config      0.3.2 4.5.0
31          conflicted      1.2.0 4.5.0
32               cpp11      0.5.2 4.5.0
33              crayon      1.5.3 4.5.0
34         credentials      2.0.2 4.5.0
35           crosstalk      1.2.1 4.5.0
36                curl      6.3.0 4.5.0
37          data.table     1.17.4 4.5.0
38                 DBI      1.2.3 4.5.0
39              dbplyr      2.5.0 4.5.0
40                desc      1.4.3 4.5.0
41            devtools      2.4.5 4.5.0
42           dichromat    2.0-0.1 4.5.0
43             diffobj      0.3.6 4.5.0
44              digest     0.6.37 4.5.0
45             downlit      0.4.4 4.5.0
46               dplyr      1.1.4 4.5.0
47              dtplyr      1.3.1 4.5.0
48              duckdb      1.3.0 4.5.0
49               e1071     1.7-16 4.5.0
50            ellipsis      0.3.2 4.5.0
51            errorist      0.1.2 4.5.0
52            evaluate      1.0.3 4.5.0
53               fansi      1.0.6 4.5.0
54              farver      2.1.2 4.5.0
55             fastmap      1.2.0 4.5.0
56           fastmatch      1.1-6 4.5.0
57            filelock      1.0.3 4.5.0
58         fontawesome      0.5.3 4.5.0
59             forcats      1.0.0 4.5.0
60               fresh      0.2.1 4.5.0
61                  fs      1.6.6 4.5.0
62           gapminder      1.0.0 4.5.0
63              gargle      1.5.2 4.5.0
64            generics      0.1.4 4.5.0
65           geojsonsf      2.0.3 4.5.0
66          geometries      0.2.4 4.5.0
67                geos      0.2.4 4.5.0
68                gert      2.1.5 4.5.0
69           gganimate      1.0.9 4.5.0
70             ggforce      0.4.2 4.5.0
71             ggplot2      3.5.2 4.5.0
72              ggraph      2.2.1 4.5.0
73             ggrepel      0.9.6 4.5.0
74           ggspatial      1.1.9 4.5.0
75            ggthemes      5.1.0 4.5.0
76                  gh      1.5.0 4.5.0
77              gifski   1.32.0-2 4.5.0
78            gitcreds      0.1.2 4.5.0
79                glue      1.8.0 4.5.0
80               golem      0.5.1 4.5.0
81         googledrive      2.1.1 4.5.0
82       googlesheets4      1.1.1 4.5.0
83        graphlayouts      1.2.2 4.5.0
84           gridExtra        2.3 4.5.0
85              gtable      0.3.6 4.5.0
86          gutenbergr      0.3.0 4.5.0
87               haven      2.5.5 4.5.0
88                here      1.0.1 4.5.0
89              hexbin     1.28.5 4.5.0
90               highr       0.11 4.5.0
91                 hms      1.1.3 4.5.0
92           htmltools    0.5.8.1 4.5.0
93         htmlwidgets      1.6.4 4.5.0
94              httpuv     1.6.16 4.5.0
95                httr      1.4.7 4.5.0
96               httr2      1.1.2 4.5.0
97                 ids      1.0.1 4.5.0
98              igraph      2.1.4 4.5.0
99                 ini      0.3.1 4.5.0
100            isoband      0.2.7 4.5.0
101           ISOcodes 2025.05.18 4.5.0
102        janeaustenr      1.0.0 4.5.0
103            janitor      2.2.1 4.5.0
104               jpeg     0.1-11 4.5.0
105          jquerylib      0.1.4 4.5.0
106            jsonify      1.2.2 4.5.0
107           jsonlite      2.0.0 4.5.0
108            keyring      1.4.0 4.5.0
109              knitr       1.50 4.5.0
110           labeling      0.4.3 4.5.0
111              later      1.4.2 4.5.0
112           lazyeval      0.2.2 4.5.0
113             leafem      0.2.4 4.5.0
114             leafgl      0.2.2 4.5.0
115         leaflegend      1.2.1 4.5.0
116            leaflet      2.2.2 4.5.0
117  leaflet.providers      2.0.0 4.5.0
118            leafpop      0.1.0 4.5.0
119           leafsync      0.1.0 4.5.0
120            libgeos   3.11.1-3 4.5.0
121          lifecycle      1.0.4 4.5.0
122              lintr      3.2.0 4.5.0
123             logger      0.4.0 4.5.0
124            lpSolve     5.6.23 4.5.0
125          lubridate      1.9.4 4.5.0
126             lwgeom     0.2-14 4.5.0
127           magrittr      2.0.3 4.5.0
128               maps      3.4.3 4.5.0
129           maptiles     0.10.0 4.5.0
130            mapview     2.11.2 4.5.0
131            memoise      2.0.1 4.5.0
132               mime       0.13 4.5.0
133             miniUI      0.1.2 4.5.0
134             modelr     0.1.11 4.5.0
135                NLP      0.3-2 4.5.0
136       nycflights13      1.0.2 4.5.0
137            openssl      2.3.3 4.5.0
138     palmerpenguins      0.1.1 4.5.0
139          patchwork      1.3.0 4.5.0
140             pillar     1.10.2 4.5.0
141           pkgbuild      1.4.8 4.5.0
142          pkgconfig      2.0.3 4.5.0
143            pkgdown      2.1.3 4.5.0
144            pkgload      1.4.0 4.5.0
145             plotly     4.10.4 4.5.0
146               plyr      1.8.9 4.5.0
147                png      0.1-8 4.5.0
148           polyclip     1.10-7 4.5.0
149             praise      1.0.0 4.5.0
150        prettyunits      1.2.0 4.5.0
151           processx      3.8.6 4.5.0
152            profvis      0.4.0 4.5.0
153           progress      1.2.3 4.5.0
154           promises      1.3.3 4.5.0
155              proxy     0.4-27 4.5.0
156                 ps      1.9.1 4.5.0
157              purrr      1.0.4 4.5.0
158             Quandl     2.11.0 4.5.0
159           quanteda      4.3.0 4.5.0
160             quarto      1.4.4 4.5.0
161                 R6      2.6.1 4.5.0
162               ragg      1.4.0 4.5.0
163         rapidjsonr      1.2.0 4.5.0
164           rappdirs      0.3.3 4.5.0
165             raster     3.6-32 4.5.0
166          rcmdcheck      1.4.0 4.5.0
167       RColorBrewer      1.1-3 4.5.0
168               Rcpp     1.0.14 4.5.0
169      RcppArmadillo   14.4.3-1 4.5.0
170          RcppEigen  0.3.4.0.2 4.5.0
171           RcppTOML      0.2.3 4.5.0
172        readMDTable      0.3.2 4.5.0
173              readr      2.1.5 4.5.0
174             readxl      1.4.5 4.5.0
175            rematch      2.0.0 4.5.0
176           rematch2      2.1.2 4.5.0
177            remotes      2.5.0 4.5.0
178               renv      1.1.4 4.5.0
179               repr      1.1.7 4.5.0
180             reprex      2.1.1 4.5.0
181        repurrrsive      1.1.0 4.5.0
182         reticulate     1.42.0 4.5.0
183                rex      1.2.1 4.5.0
184               rhub      2.0.1 4.5.0
185              rJava     1.0-11 4.5.0
186              rlang      1.1.6 4.5.0
187          rmarkdown       2.29 4.5.0
188      rnaturalearth      1.0.1 4.5.0
189  rnaturalearthdata      1.0.0 4.5.0
190 rnaturalearthhires 1.0.0.9000 4.5.0
191               rosm      0.3.0 4.5.0
192           roxygen2      7.3.2 4.5.0
193        rpivotTable      0.3.0 4.5.0
194          rprojroot      2.0.4 4.5.0
195          RSelenium      1.7.9 4.5.0
196         rstudioapi     0.17.1 4.5.0
197          rversions      2.1.2 4.5.0
198              rvest      1.0.4 4.5.0
199                 s2      1.1.9 4.5.0
200               sass     0.4.10 4.5.0
201          satellite      1.0.5 4.5.0
202             scales      1.4.0 4.5.0
203           searcher      0.0.7 4.5.0
204            selectr      0.4-2 4.5.0
205             semver      0.2.0 4.5.0
206              servr       0.32 4.5.0
207        sessioninfo      1.2.3 4.5.0
208                 sf     1.0-21 4.5.0
209          sfheaders      0.4.4 4.5.0
210              shiny     1.10.0 4.5.0
211        shinythemes      1.2.0 4.5.0
212              skimr      2.1.5 4.5.0
213               slam     0.1-55 4.5.0
214         slippymath      0.3.1 4.5.0
215          snakecase     0.11.1 4.5.0
216          SnowballC      0.7.1 4.5.0
217        sourcetools    0.1.7-1 4.5.0
218                 sp      2.2-0 4.5.0
219          spacesXYZ      1.6-0 4.5.0
220           spotifyr      2.2.5 4.5.0
221              stars      0.6-8 4.5.0
222          stopwords        2.3 4.5.0
223         stringdist     0.9.15 4.5.0
224            stringi      1.8.7 4.5.0
225            stringr      1.5.1 4.5.0
226            svglite      2.2.1 4.5.0
227                sys      3.4.3 4.5.0
228        systemfonts      1.2.3 4.5.0
229          tabulapdf    1.0.5-5 4.5.0
230              terra     1.8-54 4.5.0
231           testthat      3.2.3 4.5.0
232           textdata      0.4.5 4.5.0
233        textshaping      1.0.1 4.5.0
234           thematic      0.1.6 4.5.0
235             tibble      3.3.0 4.5.0
236         tidycensus      1.7.1 4.5.0
237          tidygraph      1.3.1 4.5.0
238              tidyr      1.3.1 4.5.0
239         tidyselect      1.2.1 4.5.0
240           tidytext      0.4.2 4.5.0
241          tidyverse      2.0.0 4.5.0
242             tigris      2.2.1 4.5.0
243         timechange      0.3.0 4.5.0
244            tinytex       0.57 4.5.0
245                 tm     0.7-16 4.5.0
246               tmap        4.1 4.5.0
247          tmaptools        3.2 4.5.0
248         tokenizers      0.3.0 4.5.0
249         transformr      0.1.5 4.5.0
250          triebeard      0.4.1 4.5.0
251             tweenr      2.0.3 4.5.0
252               tzdb      0.5.0 4.5.0
253              units      0.8-7 4.5.0
254         urlchecker      1.0.1 4.5.0
255           urltools      1.7.3 4.5.0
256            usethis      3.1.0 4.5.0
257              usmap      0.8.0 4.5.0
258          usmapdata      0.5.0 4.5.0
259               utf8      1.2.6 4.5.0
260               uuid      1.2-1 4.5.0
261              vctrs      0.6.5 4.5.0
262            viridis      0.6.5 4.5.0
263        viridisLite      0.4.2 4.5.0
264              vroom      1.6.5 4.5.0
265              waldo      0.6.1 4.5.0
266              wdman      0.2.6 4.5.0
267          websocket      1.4.4 4.5.0
268            whisker      0.4.1 4.5.0
269             whoami      1.3.0 4.5.0
270              withr      3.0.2 4.5.0
271                 wk      0.9.4 4.5.0
272          wordcloud        2.6 4.5.0
273               xfun       0.52 4.5.0
274                XML  3.99-0.18 4.5.0
275               xml2      1.3.8 4.5.0
276       xmlparsedata      1.0.5 4.5.0
277              xopen      1.0.1 4.5.0
278             xtable      1.8-4 4.5.0
279                xts     0.14.1 4.5.0
280               yaml     2.3.10 4.5.0
281                zip      2.3.3 4.5.0
282                zoo     1.8-14 4.5.0

D.3 Python Environment

python:         /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/bin/python
libpython:      /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/lib/libpython3.10.dylib
pythonhome:     /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate:/Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate
version:        3.10.17 | packaged by conda-forge | (main, Apr 10 2025, 22:23:34) [Clang 18.1.8 ]
numpy:          /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/lib/python3.10/site-packages/numpy
numpy_version:  2.2.5

NOTE: Python version was forced by RETICULATE_PYTHON