Appendix D — Environment and R Packages

Published

April 27, 2025

D.1 Environment

This book was built using

  • R version R version 4.4.2 (2024-10-31).
  • RStudio version ‘2024.09.1 Build 394’
  • Quarto: 1.6.40
  • OS: Darwin, 24.4.0, Darwin Kernel Version 24.4.0: Fri Apr 11 18:33:46 PDT 2025; root:xnu-11417.101.15~117/RELEASE_ARM64_T8112, AU-macbook.local, arm64, root, rressler, rressler

D.2 R Packages

This book uses the following non-Base R packages as of 2025-04-27.

                         Package    Version Built
1                          abind      1.4-8 4.4.1
2                          aRxiv       0.10 4.4.0
3                    AsioHeaders   1.30.2-1 4.4.1
4                        askpass      1.2.1 4.4.1
5                     assertthat      0.2.1 4.4.0
6                        attempt      0.3.1 4.4.0
7                      attention      0.4.0 4.4.0
8                      automagic      0.5.1 4.4.0
9                      available      1.1.0 4.4.0
10                     backports      1.5.0 4.4.0
11                     base64enc      0.1-3 4.4.0
12                            BH   1.87.0-1 4.4.1
13                          bigD      0.3.1 4.4.1
14                        binman      0.1.3 4.4.0
15                   BiocManager    1.30.25 4.4.1
16                           bit      4.6.0 4.4.2
17                         bit64    4.6.0-1 4.4.1
18                        bitops      1.0-9 4.4.1
19                          blob      1.2.4 4.4.0
20                          brew     1.0-10 4.4.0
21                          brio      1.1.5 4.4.0
22                         broom      1.0.8 4.4.1
23                         bslib      0.9.0 4.4.1
24                        cachem      1.1.0 4.4.0
25                         callr      3.7.6 4.4.0
26                       caTools     1.18.3 4.4.1
27                    cellranger      1.1.0 4.4.0
28                      chromote      0.5.1 4.4.1
29                      classInt     0.4-11 4.4.1
30                           cli      3.6.5 4.4.1
31                         clipr      0.8.0 4.4.0
32                    clisymbols      1.2.0 4.4.0
33                   collections      0.3.7 4.4.0
34                    colorspace      2.1-1 4.4.0
35                      cols4all        0.8 4.4.1
36                    commonmark      1.9.5 4.4.1
37                        config      0.3.2 4.4.0
38                    conflicted      1.2.0 4.4.0
39                   containerit 0.6.0.9004 4.4.1
40                         cpp11      0.5.2 4.4.1
41                        crayon      1.5.3 4.4.0
42                   credentials      2.0.2 4.4.1
43                     crosstalk      1.2.1 4.4.0
44                          crul      1.5.0 4.4.0
45                          curl      6.2.2 4.4.1
46                     cyclocomp      1.1.1 4.4.0
47                    data.table     1.17.0 4.4.1
48                           DBI      1.2.3 4.4.0
49                        dbplyr      2.5.0 4.4.0
50                       debugme      1.2.0 4.4.0
51                          desc      1.4.3 4.4.0
52                      devtools      2.4.5 4.4.0
53                     dichromat    2.0-0.1 4.4.0
54                       diffobj      0.3.6 4.4.1
55                        digest     0.6.37 4.4.1
56                       downlit      0.4.4 4.4.0
57                         dplyr      1.1.4 4.4.0
58                            DT       0.33 4.4.0
59                        dtplyr      1.3.1 4.4.0
60                        duckdb      1.2.1 4.4.1
61                      duckplyr      1.0.1 4.4.1
62                         e1071     1.7-16 4.4.1
63                      ellipsis      0.3.2 4.4.0
64                      errorist      0.1.2 4.4.0
65                      evaluate      1.0.3 4.4.0
66                         fansi      1.0.6 4.4.0
67                        farver      2.1.2 4.4.0
68                       fastmap      1.2.0 4.4.0
69                     fastmatch      1.1-6 4.4.1
70                      filelock      1.0.3 4.4.0
71                   fontawesome      0.5.3 4.4.1
72                       forcats      1.0.0 4.4.0
73                       formatR       1.14 4.4.0
74                         fresh      0.2.1 4.4.0
75                            fs      1.6.6 4.4.1
76                 futile.logger      1.4.3 4.4.0
77                futile.options      1.0.1 4.4.0
78                        future     1.40.0 4.4.1
79                  future.apply     1.11.3 4.4.1
80                     gapminder      1.0.0 4.4.0
81                        gargle      1.5.2 4.4.0
82                      generics      0.1.3 4.4.0
83                     geojsonsf      2.0.3 4.4.0
84                    geometries      0.2.4 4.4.0
85                      geonames      0.999 4.4.0
86                          geos      0.2.4 4.4.0
87                          gert      2.1.5 4.4.1
88                     gganimate      1.0.9 4.4.0
89                       ggforce      0.4.2 4.4.0
90                       ggplot2      3.5.2 4.4.1
91                        ggraph      2.2.1 4.4.0
92                       ggrepel      0.9.6 4.4.1
93                     ggspatial      1.1.9 4.4.0
94                      ggthemes      5.1.0 4.4.0
95                            gh      1.4.1 4.4.0
96                        gifski   1.32.0-2 4.4.1
97                      gitcreds      0.1.2 4.4.0
98                       globals     0.17.0 4.4.1
99                          glue      1.8.0 4.4.1
100                        golem      0.5.1 4.4.1
101                  googledrive      2.1.1 4.4.0
102                googlesheets4      1.1.1 4.4.0
103                 graphlayouts      1.2.2 4.4.1
104                    gridExtra        2.3 4.4.0
105                           gt      1.0.0 4.4.1
106                       gtable      0.3.6 4.4.0
107                   gutenbergr      0.2.4 4.4.0
108                        haven      2.5.4 4.4.0
109                         here      1.0.1 4.4.0
110                       hexbin     1.28.5 4.4.2
111                        highr       0.11 4.4.0
112                          hms      1.1.3 4.4.0
113                       hoardr      0.5.5 4.4.1
114                    htmltools    0.5.8.1 4.4.0
115                  htmlwidgets      1.6.4 4.4.0
116                     httpcode      0.3.0 4.4.0
117                       httpuv     1.6.16 4.4.1
118                         httr      1.4.7 4.4.0
119                        httr2      1.1.2 4.4.1
120                          ids      1.0.1 4.4.0
121                       igraph      2.1.4 4.4.1
122                          ini      0.3.1 4.4.0
123                        ISLR2      1.3-2 4.4.0
124                      isoband      0.2.7 4.4.0
125                     ISOcodes 2024.02.12 4.4.0
126                  janeaustenr      1.0.0 4.4.0
127                      janitor      2.2.1 4.4.1
128                         jpeg     0.1-11 4.4.1
129                    jquerylib      0.1.4 4.4.0
130                      jsonify      1.2.2 4.4.0
131                     jsonlite      2.0.0 4.4.0
132                   juicyjuice      0.1.0 4.4.0
133                      keyring      1.3.2 4.4.0
134                        knitr       1.50 4.4.0
135                     labeling      0.4.3 4.4.0
136                       Lahman     12.0-0 4.4.1
137                     lambda.r      1.2.4 4.4.0
138                        later      1.4.2 4.4.1
139                     lazyeval      0.2.2 4.4.0
140                       leafem      0.2.3 4.4.0
141                       leafgl      0.2.2 4.4.1
142                   leaflegend      1.2.1 4.4.0
143                      leaflet      2.2.2 4.4.0
144            leaflet.providers      2.0.0 4.4.0
145                      leafpop      0.1.0 4.4.0
146                     leafsync      0.1.0 4.4.0
147                      libgeos   3.11.1-3 4.4.1
148                    lifecycle      1.0.4 4.4.0
149                        lintr      3.2.0 4.4.1
150                      listenv      0.9.1 4.4.1
151                     litedown        0.7 4.4.1
152                       logger      0.4.0 4.4.1
153                      lpSolve     5.6.23 4.4.1
154                    lubridate      1.9.4 4.4.1
155                       lwgeom     0.2-14 4.4.0
156                     magrittr      2.0.3 4.4.0
157                         maps    3.4.2.1 4.4.1
158                      mapview     2.11.2 4.4.0
159                     markdown        2.0 4.4.1
160                      memoise      2.0.1 4.4.0
161                         mime       0.13 4.4.0
162                       miniUI      0.1.2 4.4.1
163                       modelr     0.1.11 4.4.0
164                   modeltools     0.2-23 4.4.0
165                      munsell      0.5.1 4.4.0
166                      netstat      0.1.2 4.4.0
167                          NLP      0.3-2 4.4.1
168                 nycflights13      1.0.2 4.4.0
169                      openssl      2.3.2 4.4.1
170                      packrat      0.9.2 4.4.0
171               palmerpenguins      0.1.1 4.4.0
172                   parallelly     1.43.0 4.4.1
173                    parsedate      1.3.2 4.4.1
174                    patchwork      1.3.0 4.4.1
175                         paws      0.9.0 4.4.1
176               paws.analytics      0.9.0 4.4.1
177 paws.application.integration      0.9.0 4.4.1
178                  paws.common      0.8.3 4.4.1
179                 paws.compute      0.9.0 4.4.1
180         paws.cost.management      0.9.0 4.4.1
181     paws.customer.engagement      0.9.0 4.4.1
182                paws.database      0.9.0 4.4.1
183         paws.developer.tools      0.9.0 4.4.1
184      paws.end.user.computing      0.9.0 4.4.1
185        paws.machine.learning      0.9.0 4.4.1
186              paws.management      0.9.0 4.4.1
187              paws.networking      0.9.0 4.4.1
188       paws.security.identity      0.9.0 4.4.1
189                 paws.storage      0.9.0 4.4.1
190                          PDE     1.4.10 4.4.0
191                       pillar     1.10.2 4.4.1
192                     pkgbuild      1.4.7 4.4.1
193                    pkgconfig      2.0.3 4.4.0
194                      pkgdown      2.1.1 4.4.1
195                      pkgload      1.4.0 4.4.0
196                          PKI     0.1-14 4.4.0
197                       plotly     4.10.4 4.4.0
198                         plyr      1.8.9 4.4.0
199                          png      0.1-8 4.4.0
200                       polite      0.1.3 4.4.0
201                     polyclip     1.10-7 4.4.0
202                       praise      1.0.0 4.4.0
203                    precommit      0.4.3 4.4.0
204                  prettyunits      1.2.0 4.4.0
205                     processx      3.8.6 4.4.1
206                      profvis      0.4.0 4.4.1
207                     progress      1.2.3 4.4.0
208                     promises      1.3.2 4.4.1
209                        proxy     0.4-27 4.4.0
210                           ps      1.9.1 4.4.1
211                        purrr      1.0.4 4.4.1
212                       Quandl     2.11.0 4.4.0
213                     quanteda      4.2.0 4.4.1
214                       quarto      1.4.4 4.4.0
215                      R.cache     0.16.0 4.4.0
216                  R.methodsS3      1.8.2 4.4.0
217                         R.oo     1.27.0 4.4.0
218                      R.utils     2.13.0 4.4.1
219                           R6      2.6.1 4.4.1
220                         ragg      1.4.0 4.4.1
221                   rapidjsonr      1.2.0 4.4.0
222                     rappdirs      0.3.3 4.4.0
223                       raster     3.6-32 4.4.1
224                   ratelimitr      0.4.1 4.4.0
225                    rcmdcheck      1.4.0 4.4.0
226                 RColorBrewer      1.1-3 4.4.0
227                         Rcpp     1.0.14 4.4.1
228                RcppArmadillo   14.4.2-1 4.4.1
229                    RcppEigen  0.3.4.0.2 4.4.1
230                 RcppParallel     5.1.10 4.4.1
231                     RcppTOML      0.2.3 4.4.1
232                    reactable      0.4.4 4.4.0
233                       reactR      0.6.1 4.4.1
234                        readr      2.1.5 4.4.0
235                       readxl      1.4.5 4.4.1
236                      rematch      2.0.0 4.4.0
237                     rematch2      2.1.2 4.4.0
238                      remotes      2.5.0 4.4.0
239                         renv      1.1.4 4.4.0
240                         repr      1.1.7 4.4.0
241                       reprex      2.1.1 4.4.0
242                  repurrrsive      1.1.0 4.4.0
243                   reticulate     1.42.0 4.4.1
244                          rex      1.2.1 4.4.0
245                         rhub      2.0.1 4.4.1
246                        rJava     1.0-11 4.4.0
247                        rjson     0.2.23 4.4.1
248                        rlang      1.1.6 4.4.1
249                    rmarkdown       2.29 4.4.1
250                rnaturalearth      1.0.1 4.4.0
251            rnaturalearthdata      1.0.0 4.4.0
252           rnaturalearthhires 1.0.0.9000 4.4.2
253                    robotstxt     0.7.15 4.4.1
254                         rosm      0.3.0 4.4.0
255                     roxygen2      7.3.2 4.4.0
256                  rpivotTable      0.3.0 4.4.0
257                  rplaywright     1.42.1 4.4.2
258                    rprojroot      2.0.4 4.4.0
259                    rsconnect      1.3.4 4.4.1
260                    RSelenium      1.7.9 4.4.0
261                   rstudioapi     0.17.1 4.4.1
262                       rtweet      2.0.0 4.4.0
263                    rversions      2.1.2 4.4.0
264                        rvest      1.0.4 4.4.0
265                           s2      1.1.7 4.4.0
266                         sass     0.4.10 4.4.1
267                    satellite      1.0.5 4.4.0
268                       scales      1.4.0 4.4.1
269                     searcher      0.0.7 4.4.0
270                      selectr      0.4-2 4.4.0
271                       semver      0.2.0 4.4.0
272                        servr       0.32 4.4.1
273                  sessioninfo      1.2.3 4.4.1
274                           sf     1.0-20 4.4.1
275                    sfheaders      0.4.4 4.4.0
276                        shiny     1.10.0 4.4.1
277                   shinyFiles      0.9.3 4.4.0
278                  shinythemes      1.2.0 4.4.0
279                        skimr      2.1.5 4.4.0
280                         slam     0.1-55 4.4.2
281                    snakecase     0.11.1 4.4.0
282                    SnowballC      0.7.1 4.4.0
283                       sodium      1.4.0 4.4.1
284                  sourcetools    0.1.7-1 4.4.0
285                           sp      2.2-0 4.4.1
286                    spacesXYZ      1.5-1 4.4.1
287                    spiderbar      0.2.5 4.4.0
288                     spotifyr      2.2.5 4.4.1
289                        stars      0.6-8 4.4.1
290                   starwarsdb      0.1.2 4.4.0
291                    stevedore      0.9.6 4.4.0
292                    stopwords        2.3 4.4.0
293                   stringdist     0.9.15 4.4.1
294                      stringi      1.8.7 4.4.0
295                      stringr      1.5.1 4.4.0
296                       styler     1.10.3 4.4.0
297                      svglite      2.1.3 4.4.0
298                          sys      3.4.3 4.4.1
299                      sysreqs 1.0.0.9000 4.4.1
300                  systemfonts      1.2.2 4.4.1
301                    tabulapdf    1.0.5-5 4.4.1
302                tabulizerjars      1.0.1 4.4.0
303                       tcltk2     1.2-11 4.4.0
304                        terra     1.8-42 4.4.1
305                     testthat      3.2.3 4.4.1
306                     textdata      0.4.5 4.4.0
307                  textshaping      1.0.0 4.4.1
308                     thematic      0.1.6 4.4.0
309                       tibble      3.2.1 4.4.0
310                   tidycensus      1.7.1 4.4.1
311                    tidygraph      1.3.1 4.4.0
312                        tidyr      1.3.1 4.4.0
313                   tidyselect      1.2.1 4.4.0
314                     tidytext      0.4.2 4.4.0
315                    tidyverse      2.0.0 4.4.0
316                       tigris      2.2.1 4.4.1
317                   timechange      0.3.0 4.4.0
318                      tinytex       0.57 4.4.1
319                           tm     0.7-16 4.4.1
320                         tmap        4.0 4.4.1
321                    tmaptools        3.2 4.4.1
322                   tokenizers      0.3.0 4.4.0
323                  topicmodels     0.2-17 4.4.0
324                  transformer      0.2.0 4.4.0
325                   transformr      0.1.5 4.4.0
326                    triebeard      0.4.1 4.4.0
327                       tweenr      2.0.3 4.4.0
328                         tzdb      0.5.0 4.4.1
329                        units      0.8-7 4.4.1
330                   urlchecker      1.0.1 4.4.0
331                     urltools      1.7.3 4.4.0
332                      usethis      3.1.0 4.4.1
333                        usmap      0.7.1 4.4.0
334                    usmapdata      0.4.0 4.4.1
335                         utf8      1.2.4 4.4.0
336                         uuid      1.2-1 4.4.0
337                           V8      6.0.3 4.4.1
338                        vctrs      0.6.5 4.4.0
339                     versions        0.3 4.4.0
340                      viridis      0.6.5 4.4.0
341                  viridisLite      0.4.2 4.4.0
342                        vroom      1.6.5 4.4.0
343                        waldo      0.6.1 4.4.1
344                        wdman      0.2.6 4.4.0
345                    websocket      1.4.4 4.4.1
346                      whisker      0.4.1 4.4.0
347                       whoami      1.3.0 4.4.0
348                  widgetframe      0.3.1 4.4.0
349                        withr      3.0.2 4.4.1
350                           wk      0.9.4 4.4.1
351                    wordcloud        2.6 4.4.0
352                         xfun       0.52 4.4.0
353                          XML  3.99-0.18 4.4.1
354                         xml2      1.3.8 4.4.1
355                 xmlparsedata      1.0.5 4.4.0
356                        xopen      1.0.1 4.4.0
357                       xtable      1.8-4 4.4.0
358                          xts     0.14.1 4.4.1
359                         yaml     2.3.10 4.4.0
360                        yesno      0.1.3 4.4.0
361                          zip      2.3.2 4.4.1
362                          zoo     1.8-14 4.4.1

D.3 Python Environment

python:         /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/bin/python
libpython:      /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate/lib/libpython3.11.dylib
pythonhome:     /Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate:/Users/rressler/Library/r-miniconda-arm64/envs/r-reticulate
version:        3.11.11 | packaged by conda-forge | (main, Dec  5 2024, 14:21:42) [Clang 18.1.8 ]
numpy:           [NOT FOUND]

NOTE: Python version was forced by RETICULATE_PYTHON